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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs4494548 1 rs74209810 chr16:20402466 DCUN1D3 chr16:20869403-20911561:- -0.41 -4 7.61E-5 Urinary uromodulin levels
BLCA cis rs4494548 1 rs74209810 chr16:20402466 THUMPD1 chr16:20744991-20753199:- -0.36 -3.89 0.000116 Urinary uromodulin levels
BLCA cis rs7589728 1 rs7425670 chr2:88522028 THNSL2 chr2:88469835-88486145:+ -0.61 -6.18 1.68E-9 Plasma clusterin levels
BLCA cis rs10935120 1 rs7426847 chr3:134267519 ANAPC13 chr3:134196547-134204865:- -0.5 -7.97 1.89E-14 Height
BLCA cis rs10935120 1 rs7426847 chr3:134267519 CEP63 chr3:134204575-134293852:+ -0.24 -4.09 5.33E-5 Height
BLCA cis rs10935120 1 rs7427492 chr3:134261654 ANAPC13 chr3:134196547-134204865:- 0.5 7.97 1.89E-14 Height
BLCA cis rs10935120 1 rs7427492 chr3:134261654 CEP63 chr3:134204575-134293852:+ 0.24 4.09 5.33E-5 Height
BLCA cis rs7428 1 rs7428 chr2:85545490 TGOLN2 chr2:85545147-85555374:- 0.22 5.16 3.96E-7 Ear protrusion
BLCA cis rs10935120 1 rs7428326 chr3:134251184 ANAPC13 chr3:134196547-134204865:- 0.49 7.7 1.15E-13 Height
BLCA cis rs10935120 1 rs7428326 chr3:134251184 CEP63 chr3:134204575-134293852:+ 0.23 3.93 0.000102 Height
BLCA cis rs10935120 1 rs7429866 chr3:134236306 ANAPC13 chr3:134196547-134204865:- -0.5 -7.88 3.42E-14 Height
BLCA cis rs10935120 1 rs7429866 chr3:134236306 CEP63 chr3:134204575-134293852:+ -0.24 -4.04 6.44E-5 Height
BLCA cis rs10935120 1 rs7432268 chr3:134242051 ANAPC13 chr3:134196547-134204865:- 0.5 7.97 1.89E-14 Height
BLCA cis rs10935120 1 rs7432268 chr3:134242051 CEP63 chr3:134204575-134293852:+ 0.24 4.09 5.33E-5 Height
BLCA cis rs10935120 1 rs7433663 chr3:134235790 ANAPC13 chr3:134196547-134204865:- 0.48 7.66 1.58E-13 Height